Computational systems biology as an animal-free approach to characterize toxicological effects of persistent organic pollutants
By Qier Wu, Rayanne Achebouche, and Karine Audouze
February 3, 2020
Exposure to persistent organic pollutants (POPs) as defined by the Stockholm convention may alter biological systems and lead to toxic effects. Computational studies appear to be a relevant approach to increase our understanding of the molecular mechanisms of POPs. We investigated the use of a systems toxicology approach to explore the effects of POPs on human health. A protein-protein association network (PPAN) was developed based on known POP-protein interactions. This model was used to predict protein complexes for several candidate POPs, including dicofol, methoxychlor and perfluorooctanoic acid (PFOA), that are listed or proposed to be listed as POPs in the Stockholm convention. Integration of multi data sources (pathways, disease annotations, adverse outcome pathways (AOPs)) involving the identified protein complexes was performed independently in order to reveal putative risk factors for human health. This approach revealed that several systems may be disturbed by these candidate POPs, mainly the reproductive, metabolism and the nervous systems. This study highlights that computational systems toxicology approach may help to decipher putative biological mechanisms of poorly studied chemicals, and to link them to possible adverse effects with the aim to support regulatory assessment and trigger new epidemiological and experimental studies. In order to develop more accurate computational models as alternative methods to animal testing, the next challenge, will be to integrate more data that are available according to the Findable, Accessible, Interoperable and Reusable (FAIR) data principles.